6K1K: Human nucleosome core particle with H2A.X S139E variant

PDB ID: 6K1KDownload
MMDB ID: 183033
PDB Deposition Date: 2019/5/10
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 6K1K: decameric; determined by author and by software (PISA)
Molecular Components in 6K1K
Label Count Molecule
Proteins (8 molecules)
2
Histone H3.1
(Gene symbol: H3C1)
Molecule annotation
2
Histone H4
(Gene symbol: H4C9)
Molecule annotation
2
Histone H2ax
(Gene symbol: H2AX)
Molecule annotation
2
Histone H2B Type 1-J
(Gene symbol: H2BC11)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (145-mer)
Molecule annotation
1
DNA (145-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (37 molecules)
1
2
CHLORIDE IONCHLORIDE ION
2
33
MANGANESE (II) IONMANGANESE (II) ION
3
2
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303