6V7Z: Human CD1d presenting alpha-Galactosylceramide in complex with VHH nanobody 1D22

PDB ID: 6V7ZDownload
MMDB ID: 192361
PDB Deposition Date: 2019/12/10
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.75  Å
Source Organism:
Lama glama▼
Similar Structures:
Biological Unit for 6V7Z: trimeric; determined by author
Molecular Components in 6V7Z
Label Count Molecule
Proteins (3 molecules)
1
Antigen-presenting Glycoprotein Cd1d
Molecule annotation
1
Beta-2-microglobulin
Molecule annotation
1
Nanobody VHH Id22
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDEN-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE
3
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
1
CHLORIDE IONCHLORIDE ION
5
1
SULFATE IONSULFATE ION
6
1
beta-D-glucopyranosebeta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303