National Center for
Biotechnology Information

6WM2: Human V-ATPase in state 1 with SidK and ADP

PDB ID:

6WM2 Download

MMDB ID:

195076

PDB Deposition Date:

2020/4/20

Updated in MMDB:

2020/12

Experimental Method:

electron microscopy

Resolution:

3.1 Å

Source Organism:

Homo sapiens▼

Taxonomy	Molecule
Homo sapiens	H, I, J, K, L, M, O, P, R, A, B, C, D, E, F, G, N, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, Q, S, T, U, V
Legionella pneumophila	X, Y, Z

Similar Structures:

Biological Unit for 6WM2: 35-meric; determined by author

Molecular Components in 6WM2
Label	Count	Molecule
Proteins (35 molecules)
H I J	3	V-type Proton Atpase Subunit E 1
K L M	3	V-type Proton Atpase Subunit G 1
O	1	V-type Proton Atpase Subunit C 1
P	1	V-type Proton Atpase Subunit H
R	1	V-type Proton Atpase 116 KDA Subunit a Isoform 1
A B C	3	V-type Proton Atpase Catalytic Subunit a
D E F	3	V-type Proton Atpase Subunit B, Brain Isoform
X Y Z	3	Sidk
G	1	V-type Proton Atpase Subunit D
N	1	V-type Proton Atpase Subunit F
0	1	V-type Proton Atpase 21 KDA Proteolipid Subunit
1 2 3 4 5 6 7 8 9	9	V-type Proton Atpase 16 KDA Proteolipid Subunit
Q	1	V-type Proton Atpase Subunit D 1
S	1	V-type Proton Atpase Subunit E 1
T	1	Ribonuclease Kappa
U	1	V-type Proton Atpase Subunit S1
V	1	Renin Receptor
Chemicals and Non-standard biopolymers (63 molecules)
1	1	beta-D-glucopyranose
2	4	beta-D-galactopyranose
3	2	2-acetamido-2-deoxy-beta-D-galactopyranose
4	2	N-acetyl-alpha-neuraminic acid
5	14	2-acetamido-2-deoxy-beta-D-glucopyranose
6	1	beta-D-mannopyranose
7	5	alpha-D-mannopyranose
8	3	alpha-D-glucopyranose
9	4	CHOLESTEROL
10	1	1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE
11	13	PHOSPHATIDYLETHANOLAMINE
12	10	tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium
13	1	methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate
14	1	ADENOSINE-5'-DIPHOSPHATE
15	1	(2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid $(2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid$