6XNY: Structure of RAG1 (R848M/E649V)-RAG2-DNA Strand Transfer Complex (Paired-Form)

PDB ID: 6XNYDownload
MMDB ID: 191745
PDB Deposition Date: 2020/7/5
Updated in MMDB: 2020/10
Experimental Method:
electron microscopy
Resolution: 2.9  Å
Source Organism:
Similar Structures:
Biological Unit for 6XNY: decameric; determined by author
Molecular Components in 6XNY
Label Count Molecule
Proteins (4 molecules)
2
V(d)j Recombination-activating Protein 1
(Gene symbol: Rag1)
Molecule annotation
2
V(d)j Recombination-activating Protein 2
(Gene symbol: Rag2)
Molecule annotation
Nucleotides(6 molecules)
1
12rss Integration Strand (55-mer)
Molecule annotation
1
23rss Integration Strand (66-mer)
Molecule annotation
2
Flanking DNA TOP Strand (16-mer)
Molecule annotation
1
23rss Signal DNA TOP Strand (45-mer)
Molecule annotation
1
12rss Signal DNA TOP Strand (34-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
4
MAGNESIUM IONMAGNESIUM ION
2
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303