6YWE: The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state

PDB ID: 6YWEDownload
MMDB ID: 195438
PDB Deposition Date: 2020/4/29
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 2.99  Å
Source Organism:
Similar Structures:
Biological Unit for 6YWE: 84-meric; determined by author
Molecular Components in 6YWE
Label Count Molecule
Proteins (80 molecules)
1
60S Ribosomal Protein L1, Mitochondrial
Molecule annotation
1
60S Ribosomal Protein L2, Mitochondrial
Molecule annotation
1
Related to Ribosomal Protein L3, Mitochondrial
Molecule annotation
1
60S Ribosomal Protein L4, Variant
Molecule annotation
1
Related to Ribosomal Protein L5, Mitochondrial
Molecule annotation
1
Ul6m
Molecule annotation
1
Ribosomal_l9 Domain-containing Protein
Molecule annotation
1
Related to Ribosomal Protein Yml11, Mitochondrial
Molecule annotation
1
Ul11m
Molecule annotation
1
Ul13m
Molecule annotation
1
Ribosomal Protein L14
Molecule annotation
1
Ribosomal Protein L15
Molecule annotation
1
Related to Ribosomal Protein L16, Mitochondrial
Molecule annotation
1
Ul17m
Molecule annotation
1
Bl19m
Molecule annotation
1
Related to Ribosomal Protein Yml49, Mitochondrial
Molecule annotation
1
Mitochondrial Large Ribosomal Subunit
Molecule annotation
1
Ul23m
Molecule annotation
1
KOW Domain-containing Protein
Molecule annotation
1
Related to 60S Ribosomal Protein L2 (Mitochondrial)
Molecule annotation
1
Bl28m
Molecule annotation
1
54S Ribosomal Protein L4, Mitochondrial
Molecule annotation
1
Related to Ribosomal Protein L30
Molecule annotation
1
Related to Ribosomal Protein Yml36, Mitochondrial
Molecule annotation
1
Related to Ribosomal Protein Yml32 (Mitochondrial),mitochondrial Ribosomal Protein Subunit L32
Molecule annotation
1
Bl33m
Molecule annotation
1
Related to Ribosomal Protein L34, Mitochondrial
Molecule annotation
1
Ribosomal Protein
Molecule annotation
1
Pebp-like Protein
Molecule annotation
1
Ml40
Molecule annotation
1
Ml41
Molecule annotation
1
L51_s25_ci-b8 Domain-containing Protein
Molecule annotation
1
Ribonuclease III
Molecule annotation
1
Mrp-l46 Domain-containing Protein
Molecule annotation
1
Ml49
Molecule annotation
1
Ml50
Molecule annotation
1
Probable Ribosomal Protein Yml44, Mitochondrial
Molecule annotation
1
Ml54
Molecule annotation
1
Rnase III Domain-containing Protein
Molecule annotation
1
Related to Ribosomal Protein Yml20, Mitochondrial
Molecule annotation
1
Mitoc_ml59 Domain-containing Protein
Molecule annotation
1
54S Ribosomal Protein L31, Mitochondrial
Molecule annotation
1
Ml67
Molecule annotation
1
L51_s25_ci-b8 Domain-containing Protein
Molecule annotation
1
Bs1m
Molecule annotation
1
Mito Ribosomal Protein S2
Molecule annotation
1
Ribosomal Protein S5
Molecule annotation
1
S4 RNA-binding Domain-containing Protein
Molecule annotation
1
Related to Ribosomal Protein S5 (Mitochondrial)
Molecule annotation
1
Ribosomal Protein S6
Molecule annotation
1
Ribosomal_s7 Domain-containing Protein
Molecule annotation
1
Us8m
Molecule annotation
1
Us9m
Molecule annotation
1
30S Ribosomal Protein S10, Mitochondrial
Molecule annotation
1
Translational Machinery Component
Molecule annotation
1
Ribosomal Protein S12
Molecule annotation
1
Probable Ribosomal Protein S13
Molecule annotation
1
Mitochondrial 37S Ribosomal Protein Mrp2
Molecule annotation
1
Related to Ribosomal Protein S15 (Mitochondrial)
Molecule annotation
1
Bs16m
Molecule annotation
1
Us17m
Molecule annotation
1
Ribosomal Protein S18
Molecule annotation
1
Ribosomal Protein S19/s15
Molecule annotation
1
Bs21m
Molecule annotation
1
37S Ribosomal Protein S25, Mitochondrial
Molecule annotation
1
Ms26
Molecule annotation
1
Ms27
Molecule annotation
1
Mitochondrial Ribosomal Protein Dap3
Molecule annotation
1
Ms33
Molecule annotation
1
37S Ribosomal Protein S24, Mitochondrial
Molecule annotation
1
37S Ribosomal Protein Mrp10, Mitochondrial
Molecule annotation
1
Duf1713 Domain-containing Protein
Molecule annotation
1
Protein Fyv4, Mitochondrial
Molecule annotation
2
Manganese and Iron Superoxide Dismutase
Molecule annotation
1
Ms45
Molecule annotation
1
Ms46
Molecule annotation
1
3-hydroxyisobutyryl-coa Hydrolase, Mitochondrial
Molecule annotation
2
IF1
Molecule annotation
Nucleotides(4 molecules)
1
23S rRNA
Molecule annotation
1
tRNA P/E State
Molecule annotation
1
16S rRNA
Molecule annotation
1
mRNA
Molecule annotation
Chemicals and Non-standard biopolymers (302 molecules)
242
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
1
SPERMINE (Link to PubChem not yet available)SPERMINE
55
POTASSIUM ION (Link to PubChem not yet available)POTASSIUM ION
2
ZINC ION (Link to PubChem not yet available)ZINC ION
1
NICOTINAMIDE-ADENINE-DINUCLEOTIDE (Link to PubChem not yet available)NICOTINAMIDE-ADENINE-DINUCLEOTIDE
1
ADENOSINE-5'-TRIPHOSPHATE (Link to PubChem not yet available)ADENOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.

Citing MMDB