6ZP6: Yeast 20S proteasome in complex with glidobactin-like natural product HB334

PDB ID: 6ZP6Download
MMDB ID: 202046
PDB Deposition Date: 2020/7/8
Updated in MMDB: 2024/09
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 6ZP6: 28-meric; determined by author
Molecular Components in 6ZP6
Label Count Molecule
Proteins (28 molecules)
2
Proteasome Subunit Alpha Type-2
Molecule annotation
2
Proteasome Subunit Alpha Type-3
Molecule annotation
2
Proteasome Subunit Alpha Type-4
Molecule annotation
2
Proteasome Subunit Alpha Type-5
Molecule annotation
2
Proteasome Subunit Alpha Type-6
Molecule annotation
2
Probable Proteasome Subunit Alpha Type-7
Molecule annotation
2
Proteasome Subunit Alpha Type-1
Molecule annotation
2
Proteasome Subunit Beta Type-2
Molecule annotation
2
Proteasome Subunit Beta Type-3
Molecule annotation
2
Proteasome Subunit Beta Type-4
Molecule annotation
2
Proteasome Subunit Beta Type-5
Molecule annotation
2
Proteasome Subunit Beta Type-6
Molecule annotation
2
Proteasome Subunit Beta Type-7
Molecule annotation
2
Proteasome Subunit Beta Type-1
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
8
MAGNESIUM IONMAGNESIUM ION
2
2
CHLORIDE IONCHLORIDE ION
3
4
~{N}-[(2~{S},3~{R})-1-[[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-5-phenyl-pentanamide~{N}-[(2~{S},3~{R})-1-[[(5~{S},8~{S},10~{S})-5-methyl-10-oxidanyl-2,7-bis(oxidanylidene)-1,6-diazacyclododec-8-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-5-phenyl-pentanamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303