7LXJ: Bacillus cereus DNA glycosylase AlkD bound to a duocarmycin SA-adenine nucleobase adduct and DNA containing an abasic site

PDB ID: 7LXJDownload
MMDB ID: 208920
PDB Deposition Date: 2021/3/3
Updated in MMDB: 2021/12
Experimental Method:
x-ray diffraction
Resolution: 1.93  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 7LXJ: trimeric; determined by author and by software (PISA)
Molecular Components in 7LXJ
Label Count Molecule
Protein (1 molecule)
1
DNA-7-methylguanine Glycosylase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*gp*cp*ap*ap*(orp)p*gp*gp*c)-3')
Molecule annotation
1
DNA (5'-d(*tp*gp*cp*cp*tp*tp*tp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
CALCIUM IONCALCIUM ION
2
1
methyl (8R)-8-{[(4P)-6-amino-3H-purin-3-yl]methyl}-4-hydroxy-6-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indole-2-carboxylatemethyl (8R)-8-{[(4P)-6-amino-3H-purin-3-yl]methyl}-4-hydroxy-6-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indole-2-carboxylate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303