National Center for
Biotechnology Information

7RIY: RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 2 soaked with UTP

PDB ID:

MMDB ID:

210731

PDB Deposition Date:

2021/7/20

Updated in MMDB:

2023/10

Experimental Method:

x-ray diffraction

Resolution:

3.7 Å

Source Organism:

Saccharomyces cerevisiae S288C▼

Taxonomy	Molecule
Saccharomyces cerevisiae S288C	A, B, C, E, F, H, I, J, K, L
synthetic construct	R, T, N

Similar Structures:

Biological Unit for 7RIY: tridecameric; determined by author

Molecular Components in 7RIY
Label	Count	Molecule
Proteins (10 molecules)
A	1	DNA-directed RNA Polymerase II Subunit Rpb1
B	1	DNA-directed RNA Polymerase II Subunit Rpb2
C	1	DNA-directed RNA Polymerase II Subunit Rpb3
E	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
F	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
H	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I	1	DNA-directed RNA Polymerase II Subunit Rpb9
J	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
K	1	DNA-directed RNA Polymerase II Subunit Rpb11
L	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Nucleotides(3 molecules)
R	1	RNA
T	1	Template Strand DNA
N	1	Non-template Strand DNA
Chemicals and Non-standard biopolymers (10 molecules)
1	1	MAGNESIUM ION
2	1	3-({3-[(3-{[4-({4-[(4-{[4-({(2R)-2-amino-4-[(1-methyl-4-{[1-methyl-4-({1-methyl-4-[(1-methyl-1H-imidazole-2-carbonyl)amino]-1H-imidazole-2-carbonyl}amino)-1H-pyrrole-2-carbonyl]amino}-1H-pyrrole-2-carbonyl)amino]butanoyl}amino)-1-methyl-1H-imidazole-2-carbonyl]amino}-1-methyl-1H-pyrrole-2-carbonyl)amino]-1-methyl-1H-pyrrole-2-carbonyl}amino)-1-methyl-1H-pyrrole-2-carbonyl]amino}propyl)(methyl)amino]propyl}carbamoyl)benzoic acid
3	8	ZINC ION

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Citing MMDB