National Center for
Biotechnology Information

8BGH: Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

PDB ID:

8BGH Download

MMDB ID:

234162

PDB Deposition Date:

2022/10/27

Updated in MMDB:

2023/08

Experimental Method:

electron microscopy

Resolution:

2.88 Å

Source Organism:

Escherichia coli K-12▼

Taxonomy	Molecule
Escherichia coli K-12	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, a, b, c, d, e, f, g, h, i, j , k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, 0, 1, 2, 4
synthetic construct	3

Similar Structures:

Biological Unit for 8BGH: 54-meric; determined by author and by software (PISA)

Molecular Components in 8BGH
Label	Count	Molecule
Proteins (49 molecules)
A	1	50S Ribosomal Protein L2
B	1	50S Ribosomal Protein L3
C	1	50S Ribosomal Protein L4
D	1	50S Ribosomal Protein L5
E	1	50S Ribosomal Protein L6
F	1	50S Ribosomal Protein L9
G	1	50S Ribosomal Protein L13
H	1	50S Ribosomal Protein L14
I	1	50S Ribosomal Protein L15
J	1	50S Ribosomal Protein L16
K	1	50S Ribosomal Protein L17
L	1	50S Ribosomal Protein L18
M	1	50S Ribosomal Protein L19
N	1	50S Ribosomal Protein L20
O	1	50S Ribosomal Protein L21
P	1	50S Ribosomal Protein L22
Q	1	50S Ribosomal Protein L23
R	1	50S Ribosomal Protein L24
S	1	50S Ribosomal Protein L25
T	1	50S Ribosomal Protein L27
U	1	50S Ribosomal Protein L28
V	1	50S Ribosomal Protein L29
W	1	50S Ribosomal Protein L30
X	1	50S Ribosomal Protein L31
a	1	50S Ribosomal Protein L32
b	1	50S Ribosomal Protein L33
c	1	50S Ribosomal Protein L34
d	1	50S Ribosomal Protein L35
e	1	50S Ribosomal Protein L36
f	1	30S Ribosomal Protein S2
g	1	30S Ribosomal Protein S3
h	1	30S Ribosomal Protein S4
i	1	30S Ribosomal Protein S5
j	1	30S Ribosomal Protein S6
k	1	30S Ribosomal Protein S7
l	1	30S Ribosomal Protein S8
m	1	30S Ribosomal Protein S9
n	1	30S Ribosomal Protein S10
o	1	30S Ribosomal Protein S11
p	1	30S Ribosomal Protein S12
q	1	30S Ribosomal Protein S13
r	1	30S Ribosomal Protein S14
s	1	30S Ribosomal Protein S15
t	1	30S Ribosomal Protein S16
u	1	30S Ribosomal Protein S17
v	1	30S Ribosomal Protein S18
w	1	30S Ribosomal Protein S19
x	1	30S Ribosomal Protein S20
y	1	30S Ribosomal Protein S21
Nucleotides(5 molecules)
0	1	23S rRNA Rrlg-rrna
1	1	5S rRNA
2	1	16S rRNA Rrsb-rrna
3	1	mRNA
4	1	Acylated P-site tRNA(fmet)
Chemical and Non-standard biopolymers (1 molecule)
1	1	N-FORMYLMETHIONINE

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303