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8BPO: Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

PDB ID:

8BPO Download

MMDB ID:

232354

PDB Deposition Date:

2022/11/17

Updated in MMDB:

2024/10

Experimental Method:

electron microscopy

Resolution:

2.8 Å

Source Organism:

Oryctolagus cuniculus▼

Taxonomy	Molecule
Oryctolagus cuniculus	A1, B1, C1, D1, A2, B2, C2, D2, E2, F2, G2, H2, I2, J2, K2, L2, M2, N2, O2, P2, Q2, R2, S2, T2, U2, V2, W2, X2, Y2, Z2, a2, b2, c2, d2, e2, f2, g2, h2, i2, j2, k2, l2, m2, n2, o2, p2, q2, r2
Homo sapiens	s2, t2, u2

Similar Structures:

Biological Unit for 8BPO: 51-meric; determined by author

Molecular Components in 8BPO
Label	Count	Molecule
Proteins (48 molecules)
D1	1	Nascent Polypeptide-associated Complex Subunit Alpha N-terminal Region
A2	1	60S Ribosomal Protein L8
B2	1	Ribosomal Protein L3
C2	1	60S Ribosomal Protein L4
D2	1	Ribosomal_l18_c Domain-containing Protein
E2	1	60S Ribosomal Protein L6
F2	1	60S Ribosomal Protein L7
G2	1	60S Ribosomal Protein L7A
H2	1	60S Ribosomal Protein L9
I2	1	Ribosomal Protein L10
J2	1	60S Ribosomal Protein L11
K2	1	60S Ribosomal Protein L13
L2	1	60S Ribosomal Protein L14
M2	1	Ribosomal Protein L15
N2	1	60S Ribosomal Protein L13a
O2	1	60S Ribosomal Protein L17
P2	1	Ribosomal Protein L18
Q2	1	60S Ribosomal Protein L19
R2	1	60S Ribosomal Protein L18a
S2	1	60S Ribosomal Protein L21
T2	1	60S Ribosomal Protein L22
U2	1	60S Ribosomal Protein L23
V2	1	Ribosomal Protein L24
W2	1	Ribosomal_l23en Domain-containing Protein
X2	1	Ribosomal Protein L26
Y2	1	60S Ribosomal Protein L27
Z2	1	60S Ribosomal Protein L27a
a2	1	60S Ribosomal Protein L29
b2	1	60S Ribosomal Protein L30
c2	1	60S Ribosomal Protein L31
d2	1	Ribosomal Protein L32
e2	1	60S Ribosomal Protein L35a
f2	1	60S Ribosomal Protein L34
g2	1	60S Ribosomal Protein L35
h2	1	60S Ribosomal Protein L36
i2	1	Ribosomal Protein L37
j2	1	60S Ribosomal Protein L38
k2	1	60S Ribosomal Protein L39-like
l2	1	Ubiquitin-60s Ribosomal Protein L40
m2	1	60S Ribosomal Protein L41
n2	1	60S Ribosomal Protein L36a-like
o2	1	60S Ribosomal Protein L37a
p2	1	60S Ribosomal Protein L28
q2	1	60S Acidic Ribosomal Protein P0
r2	1	60S Ribosomal Protein L12
s2	1	S Phase Cyclin A-associated Protein in the Endoplasmic Reticulum
t2	1	Tetratricopeptide Repeat Protein 5
u2	1	Tubulin Beta Chain
Nucleotides(3 molecules)
A1	1	28S Ribosomal RNA
B1	1	5S Ribosomal RNA
C1	1	5.8s Ribosomal RNA
Chemicals and Non-standard biopolymers (219 molecules)
1	214	MAGNESIUM ION
2	5	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303