8BPX: Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition)

PDB ID: 8BPXDownload
MMDB ID: 225914
PDB Deposition Date: 2022/11/18
Updated in MMDB: 2023/02
Experimental Method:
electron microscopy
Resolution: 2.09  Å
Source Organism:
Similar Structures:
Biological Unit for 8BPX: 67-meric; determined by author
Molecular Components in 8BPX
Label Count Molecule
Proteins (67 molecules)
1
Nadh-ubiquinone Oxidoreductase Chain 3
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 7, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 3
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 2
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Flavoprotein 2, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Flavoprotein 1, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 1, Mitochondrial
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 1
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 8-a, Mitochondrial
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 6
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4L
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 5
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 2
Molecule annotation
1
2fe-2s Ferredoxin-like Superfamily Protein
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 9, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 4, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 6, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 2
Molecule annotation
1
Acyl Carrier Protein 1, Mitochondrial
Molecule annotation
1
Acyl Carrier Protein 2, Mitochondrial
Molecule annotation
1
Probable Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 5, Mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 6
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 8-B
Molecule annotation
1
Outer Envelope Pore Protein 16-3, Chloroplastic/mitochondrial
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 13-a
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 1
Molecule annotation
1
At2g46540/f11c10.23
Molecule annotation
1
Transmembrane Protein
Molecule annotation
1
Excitatory Amino Acid Transporter
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 5-B
Molecule annotation
1
At4g16450
Molecule annotation
1
Esss Subunit of Nadh:ubiquinone Oxidoreductase (Complex I) Protein
Molecule annotation
1
At1g67350
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 2
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 3-A
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 8, Mitochondrial
Molecule annotation
1
At2g31490 Protein
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 9
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 7
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 10-b
Molecule annotation
1
Probable Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 12
Molecule annotation
1
Uncharacterized Protein At1g67785
Molecule annotation
1
Uncharacterized Protein At2g27730, Mitochondrial
Molecule annotation
1
Gamma Carbonic Anhydrase-like 2, Mitochondrial
Molecule annotation
1
Gamma Carbonic Anhydrase 2, Mitochondrial
Molecule annotation
1
Gamma Carbonic Anhydrase 1, Mitochondrial
Molecule annotation
2
Probable Mitochondrial-processing Peptidase Subunit Alpha-1, Mitochondrial
Molecule annotation
2
Probable Mitochondrial-processing Peptidase Subunit Beta, Mitochondrial
Molecule annotation
2
Cytochrome B
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske-1, Mitochondrial
Molecule annotation
2
Cytochrome C1 2, Heme Protein, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 7-2, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 8-1, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 6-1, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 9, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 10, Mitochondrial
Molecule annotation
Chemicals and Non-standard biopolymers (91 molecules)
1
10
(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
2
6
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
3
14
PHOSPHATIDYLETHANOLAMINEPHOSPHATIDYLETHANOLAMINE
4
4
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
5
1
FLAVIN MONONUCLEOTIDEFLAVIN MONONUCLEOTIDE
6
1
Ubiquinone-9Ubiquinone-9
7
6
2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside
8
11
1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
9
9
(7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE
10
4
2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE
11
1
FE (III) IONFE (III) ION
12
1
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATENADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
13
4
ZINC IONZINC ION
14
2
S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioateS-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate
15
9
CARDIOLIPINCARDIOLIPIN
16
1
CROTONYL COENZYME ACROTONYL COENZYME A
17
6
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
18
1
UBIQUINONE-7UBIQUINONE-7
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303