8BVW: RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)

PDB ID: 8BVWDownload
MMDB ID: 229758
PDB Deposition Date: 2022/12/20
Updated in MMDB: 2024/07
Experimental Method:
electron microscopy
Resolution: 4  Å
Source Organism:
unidentified adenovirus
Similar Structures:
Biological Unit for 8BVW: 42-meric; determined by author
Molecular Components in 8BVW
Label Count Molecule
Proteins (40 molecules)
1
General Transcription and DNA Repair Factor IIH Helicase Subunit XPB
Molecule annotation
1
Tfiih Basal Transcription Factor Complex Helicase XPD Subunit
Molecule annotation
1
General Transcription Factor IIH Subunit 1
Molecule annotation
1
General Transcription Factor IIH Subunit 4
Molecule annotation
1
General Transcription Factor IIH Subunit 2
Molecule annotation
1
General Transcription Factor IIH Subunit 3
Molecule annotation
1
General Transcription Factor IIH Subunit 5
Molecule annotation
1
Cdk-activating Kinase Assembly Factor Mat1
Molecule annotation
1
Cyclin-dependent Kinase 7
Molecule annotation
1
Cyclin-h
Molecule annotation
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
RNA Polymerase II Subunit D
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit E
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit F
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb7
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11-a
Molecule annotation
1
RNA Polymerase II Subunit K
Molecule annotation
1
Transcription Initiation Factor IIB
Molecule annotation
1
Tata-box-binding Protein
Molecule annotation
1
General Transcription Factor IIF Subunit 1
Molecule annotation
1
General Transcription Factor IIF Subunit 2
Molecule annotation
1
Transcription Initiation Factor IIA Subunit 1
Molecule annotation
1
Transcription Initiation Factor IIA Subunit 2
Molecule annotation
1
General Transcription Factor IIE Subunit 1
Molecule annotation
1
Transcription Initiation Factor IIE Subunit Beta
Molecule annotation
1
Unassigned Peptide, Likely XPB
Molecule annotation
1
Unassigned Peptide, Likely Tfiie-beta
Molecule annotation
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1
Molecule annotation
2
Histone H2B 1.1
Molecule annotation
Nucleotides(2 molecules)
1
Non-template DNA
Molecule annotation
1
Template DNA
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
17
1
* Click molecule labels to explore molecular sequence information.

Citing MMDB