8CDO: PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like

PDB ID: 8CDODownload
MMDB ID: 241650
PDB Deposition Date: 2023/1/31
Updated in MMDB: 2024/02
Experimental Method:
x-ray diffraction
Resolution: 1.32  Å
Source Organism:
Similar Structures:
Biological Unit for 8CDO: monomeric; determined by author and by software (PISA)
Molecular Components in 8CDO
Label Count Molecule
Protein (1 molecule)
1
Agrocinopine Utilization Periplasmic Binding Protein Acca
(Gene symbol: accA)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
2
alpha-D-glucopyranosealpha-D-glucopyranose
2
2
beta-D-fructofuranosebeta-D-fructofuranose
3
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
4
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
5
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
6
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
7
1
2-O-phosphono-beta-D-glucopyranose2-O-phosphono-beta-D-glucopyranose
8
1
2-O-phosphono-alpha-D-glucopyranose2-O-phosphono-alpha-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303