8EBS: Initial DNA-lesion (Cy5) binding by XPC and TFIIH

PDB ID: 8EBSDownload
MMDB ID: 229238
PDB Deposition Date: 2022/8/31
Updated in MMDB: 2024/06
Experimental Method:
electron microscopy
Resolution: 4  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8EBS: dodecameric; determined by author
Molecular Components in 8EBS
Label Count Molecule
Proteins (10 molecules)
1
Tfiih Basal Transcription Factor Complex Helicase XPB Subunit
Molecule annotation
1
General Transcription and DNA Repair Factor IIH Helicase Subunit XPD
Molecule annotation
1
General Transcription Factor IIH Subunit 1
Molecule annotation
1
General Transcription Factor IIH Subunit 4, P52
Molecule annotation
1
General Transcription Factor IIH Subunit 2
Molecule annotation
1
General Transcription Factor IIH Subunit 3
Molecule annotation
1
General Transcription Factor IIH Subunit 5
Molecule annotation
1
Xeroderma Pigmentosum, Complementation Group C, Isoform Cra_a
Molecule annotation
1
UV Excision Repair Protein Rad23 Homolog B
Molecule annotation
1
Centrin-2
Molecule annotation
Nucleotides(2 molecules)
1
DNA (Cy5)
Molecule annotation
1
DNA
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
5
ZINC IONZINC ION
3
2
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303