8P9X: Vitamin D receptor complex with Xe4Me agonist ligand

PDB ID: 8P9XDownload
MMDB ID: 248802
PDB Deposition Date: 2023/6/6
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 8P9X: dimeric; determined by author
Molecular Components in 8P9X
Label Count Molecule
Proteins (2 molecules)
1
Vitamin D3 Receptor a
Molecule annotation
1
Nuclear Receptor Coactivator 2
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
ACETATE IONACETATE ION
2
1
(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-1,7~{a}-dimethyl-1-(5-methyl-5-oxidanyl-hexa-1,3-diynyl)-2,3,3~{a},5,6,7-hexahydroinden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-1,7~{a}-dimethyl-1-(5-methyl-5-oxidanyl-hexa-1,3-diynyl)-2,3,3~{a},5,6,7-hexahydroinden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303