8RJD: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

PDB ID: 8RJDDownload
MMDB ID: 241789
PDB Deposition Date: 2023/12/20
Updated in MMDB: 2024/08
Experimental Method:
electron microscopy
Resolution: 2.78574  Å
Source Organism:
Oryctolagus cuniculus
Similar Structures:
Biological Unit for 8RJD: 56-meric; determined by author
Molecular Components in 8RJD
Label Count Molecule
Proteins (52 molecules)
1
Protein Transport Protein Sec61 Subunit Alpha Isoform 1
Molecule annotation
1
Protein Transport Protein Sec61 Subunit Beta
Molecule annotation
1
Protein Transport Protein Sec61 Subunit Gamma
Molecule annotation
1
Stress-associated Endoplasmic Reticulum Protein
Molecule annotation
1
Translocon-associated Protein Subunit Alpha
Molecule annotation
1
Translocon-associated Protein Subunit Beta
Molecule annotation
1
Translocon-associated Protein Subunit Gamma
Molecule annotation
1
Translocon-associated Protein Subunit Delta
Molecule annotation
1
Calnexin
Molecule annotation
1
Ribosomal Protein L8
Molecule annotation
1
Nascent Chain
Molecule annotation
1
Large Ribosomal Subunit Protein UL4
Molecule annotation
1
Ribosomal_l18_c Domain-containing Protein
Molecule annotation
1
60S Ribosomal Protein L6
Molecule annotation
1
Ribosomal Protein Ul30
Molecule annotation
1
60S Ribosomal Protein L7A
Molecule annotation
1
60S Ribosomal Protein L9
Molecule annotation
1
60S Ribosomal Protein L10
Molecule annotation
1
60S Ribosomal Protein L11
Molecule annotation
1
60S Ribosomal Protein L13
Molecule annotation
1
60S Ribosomal Protein L14
Molecule annotation
1
Ribosomal Protein L15
Molecule annotation
1
60S Ribosomal Protein L13a
Molecule annotation
1
Ul22
Molecule annotation
1
Ribosomal Protein L18
Molecule annotation
1
Ribosomal Protein L19
Molecule annotation
1
60S Ribosomal Protein L18a
Molecule annotation
1
60S Ribosomal Protein L21
Molecule annotation
1
Large Ribosomal Subunit Protein El22
Molecule annotation
1
Ribosomal Protein L23
Molecule annotation
1
Ribosomal Protein L24
Molecule annotation
1
Large Ribosomal Subunit Protein Ul23 N-terminal Domain-containing Protein
Molecule annotation
1
Ribosomal Protein L26
Molecule annotation
1
60S Ribosomal Protein L27
Molecule annotation
1
60S Ribosomal Protein L27a
Molecule annotation
1
60S Ribosomal Protein L29
Molecule annotation
1
Large Ribosomal Subunit Protein El30
Molecule annotation
1
60S Ribosomal Protein L31
Molecule annotation
1
Ribosomal Protein L32
Molecule annotation
1
60S Ribosomal Protein L35a
Molecule annotation
1
60S Ribosomal Protein L34
Molecule annotation
1
60S Ribosomal Protein L35
Molecule annotation
1
60S Ribosomal Protein L36
Molecule annotation
1
Ribosomal Protein L37
Molecule annotation
1
Large Ribosomal Subunit Protein El38
Molecule annotation
1
60S Ribosomal Protein L39-like
Molecule annotation
1
El40
Molecule annotation
1
60S Ribosomal Protein L41
Molecule annotation
1
60S Ribosomal Protein L36a-like
Molecule annotation
1
60S Ribosomal Protein L37a
Molecule annotation
1
60S Ribosomal Protein L28
Molecule annotation
1
Ribosomal Protein L3
Molecule annotation
Nucleotides(4 molecules)
1
28S rRNA
Molecule annotation
1
P-site tRNA
Molecule annotation
1
5S rRNA
Molecule annotation
1
5.8s rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (223 molecules)
218
5
* Click molecule labels to explore molecular sequence information.

Citing MMDB