8VND: Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 600s

PDB ID: 8VNDDownload
MMDB ID: 249629
PDB Deposition Date: 2024/1/13
Updated in MMDB: 2024/07
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8VND: hexameric; determined by author and by software (PISA)
Molecular Components in 8VND
Label Count Molecule
Proteins (2 molecules)
2
Intron-encoded Endonuclease I-ppoi
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(*tp*tp*gp*ap*cp*tp*cp*tp*cp*tp*tp*ap*a)-3')
Molecule annotation
2
DNA (5'-d(p*gp*ap*gp*ap*gp*tp*cp*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
5
GLYCEROLGLYCEROL
2
4
ZINC IONZINC ION
3
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303