8VNG: Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 40s

PDB ID: 8VNGDownload
MMDB ID: 249632
PDB Deposition Date: 2024/1/13
Updated in MMDB: 2024/07
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8VNG: tetrameric; determined by author and by software (PISA)
Molecular Components in 8VNG
Label Count Molecule
Proteins (2 molecules)
2
Intron-encoded Endonuclease I-ppoi
Molecule annotation
Nucleotides(2 molecules)
2
DNA (5'-d(*tp*tp*gp*ap*cp*tp*cp*tp*cp*tp*tp*ap*ap*gp*ap*gp*ap*gp*tp*cp*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
2
SODIUM IONSODIUM ION
3
5
GLYCEROLGLYCEROL
4
4
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303