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8VNG:
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 40s
PDB ID:
8VNG
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MMDB ID:
249632
PDB Deposition Date:
2024/1/13
Updated in MMDB:
2024/07
Experimental Method:
x-ray diffraction
Resolution:
1.6 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
C, D
Physarum polycephalum
A, B
Similar Structures:
VAST+
Download sequence data
Biological Unit for 8VNG: tetrameric; determined by author and by software (PISA)
Molecular Components in 8VNG
Label
Count
Molecule
Proteins (2 molecules)
A
B
2
Intron-encoded Endonuclease I-ppoi
Nucleotides(2 molecules)
C
D
2
DNA (5'-d(*tp*tp*gp*ap*cp*tp*cp*tp*cp*tp*tp*ap*ap*gp*ap*gp*ap*gp*tp*cp*a)-3')
Chemicals and Non-standard biopolymers (13 molecules)
1
2
MANGANESE (II) ION
2
2
SODIUM ION
3
5
GLYCEROL
4
4
ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303