U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM279417v1

Organism name:
Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_34_12 (archaea)
Taxonomy check:
Inconclusive
Isolate:
CG10_big_fil_rev_8_21_14_0_10_34_12
BioSample:
SAMN06659408
BioProject:
PRJNA362739
Submitter:
DOE Joint Genome Institute
Date:
2017/11/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002794175.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PFDA01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1450711 [UID] 5675128 [GenBank]

See Genome Information for Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_34_12

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/07/2017 17:12:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::770
CDS (total)::744
Genes (coding)::729
CDS (coding)::729
Genes (RNA)::26
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::24
ncRNAs::1
Pseudo Genes (total)::15
Pseudo Genes (ambiguous residues)::9 of 15
Pseudo Genes (frameshifted)::2 of 15
Pseudo Genes (incomplete)::4 of 15
Pseudo Genes (internal stop)::1 of 15
Pseudo Genes (multiple problems)::1 of 15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length591,010
Total ungapped length590,202
Gaps between scaffolds0
Number of scaffolds50
Scaffold N5023,079
Scaffold L5010
Number of contigs69
Contig N5018,040
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced591,01050590,20223,079190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_34_12Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_34_12

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana