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Source database (GenBank or RefSeq) File type

UU_Cfam_GSD_1.0

Organism name:

Canis lupus familiaris (dog)

Infraspecific name:

Breed: German Shepherd

Isolate:

Mischka

Sex:

female

BioSample:

SAMN13230619

BioProject:

PRJNA587469

Submitter:

Uppsala University

Date:

2020/03/10

Synonyms:

canFam4

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_011100685.1 (latest)

RefSeq assembly accession:

GCF_011100685.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAAHUQ01

Assembly method:

FALCON v. 0.5.0

Expected final version:

yes

Genome coverage:

100.0x

IDs: 6119491 [UID] 17410168 [GenBank] 20192338 [RefSeq]

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011100685.1	≠	GCF_011100685.1	UU_Cfam_GSD_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,481,983,352
Total ungapped length	2,481,924,852
Gaps between scaffolds	0
Number of scaffolds	2,197
Scaffold N50	64,299,765
Scaffold L50	15
Number of contigs	2,782
Contig N50	14,840,767
Contig L50	57
Total number of chromosomes and plasmids	39
Number of component sequences (WGS or clone)	2,782

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM021962.1	=	NC_049222.1	0
Chromosome 2	CM021963.1	=	NC_049223.1	0
Chromosome 3	CM021964.1	=	NC_049224.1	0
Chromosome 4	CM021965.1	=	NC_049225.1	0
Chromosome 5	CM021966.1	=	NC_049226.1	0
Chromosome 6	CM021967.1	=	NC_049227.1	0
Chromosome 7	CM021968.1	=	NC_049228.1	0
Chromosome 8	CM021969.1	=	NC_049229.1	0
Chromosome 9	CM021970.1	=	NC_049230.1	0
Chromosome 10	CM021971.1	=	NC_049231.1	0
Chromosome 11	CM021972.1	=	NC_049232.1	0
Chromosome 12	CM021973.1	=	NC_049233.1	0
Chromosome 13	CM021974.1	=	NC_049234.1	0
Chromosome 14	CM021975.1	=	NC_049235.1	0
Chromosome 15	CM021976.1	=	NC_049236.1	0
Chromosome 16	CM021977.1	=	NC_049237.1	0
Chromosome 17	CM021978.1	=	NC_049238.1	0
Chromosome 18	CM021979.1	=	NC_049239.1	0
Chromosome 19	CM021980.1	=	NC_049240.1	0
Chromosome 20	CM021981.1	=	NC_049241.1	0
Chromosome 21	CM021982.1	=	NC_049242.1	0
Chromosome 22	CM021983.1	=	NC_049243.1	0
Chromosome 23	CM021984.1	=	NC_049244.1	0
Chromosome 24	CM021985.1	=	NC_049245.1	0
Chromosome 25	CM021986.1	=	NC_049246.1	0
Chromosome 26	CM021987.1	=	NC_049247.1	0
Chromosome 27	CM021988.1	=	NC_049248.1	0
Chromosome 28	CM021989.1	=	NC_049249.1	0
Chromosome 29	CM021990.1	=	NC_049250.1	0
Chromosome 30	CM021991.1	=	NC_049251.1	0
Chromosome 31	CM021992.1	=	NC_049252.1	0
Chromosome 32	CM021993.1	=	NC_049253.1	0
Chromosome 33	CM021994.1	=	NC_049254.1	0
Chromosome 34	CM021995.1	=	NC_049255.1	0
Chromosome 35	CM021996.1	=	NC_049256.1	0
Chromosome 36	CM021997.1	=	NC_049257.1	0
Chromosome 37	CM021998.1	=	NC_049258.1	0
Chromosome 38	CM021999.1	=	NC_049259.1	0
Chromosome X	CM022000.1	=	NC_049260.1	0
unplaced	n/a	n/a	n/a	2,158

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,481,983,352	2,197	2,481,924,852	64,299,765	585
Chromosome 1	123,556,469	1	123,555,469	123,556,469	10
Chromosome 2	84,979,418	1	84,977,118	84,979,418	23
Chromosome 3	92,479,059	1	92,478,159	92,479,059	9
Chromosome 4	89,535,178	1	89,533,978	89,535,178	12
Chromosome 5	89,562,946	1	89,562,246	89,562,946	7
Chromosome 6	78,113,029	1	78,111,829	78,113,029	12
Chromosome 7	81,081,596	1	81,081,196	81,081,596	4
Chromosome 8	76,405,709	1	76,405,309	76,405,709	4
Chromosome 9	61,171,909	1	61,171,409	61,171,909	5
Chromosome 10	70,643,054	1	70,642,554	70,643,054	5
Chromosome 11	74,805,798	1	74,803,998	74,805,798	18
Chromosome 12	72,970,719	1	72,969,919	72,970,719	8
Chromosome 13	64,299,765	1	64,297,965	64,299,765	18
Chromosome 14	61,112,200	1	61,111,200	61,112,200	10
Chromosome 15	64,676,183	1	64,675,283	64,676,183	9
Chromosome 16	60,362,399	1	60,359,999	60,362,399	24
Chromosome 17	65,088,165	1	65,086,665	65,088,165	15
Chromosome 18	56,472,973	1	56,472,573	56,472,973	4
Chromosome 19	55,516,201	1	55,514,801	55,516,201	14
Chromosome 20	58,627,490	1	58,626,990	58,627,490	5
Chromosome 21	51,742,555	1	51,741,255	51,742,555	13
Chromosome 22	61,573,679	1	61,573,379	61,573,679	3
Chromosome 23	53,134,997	1	53,134,597	53,134,997	4
Chromosome 24	48,566,227	1	48,565,227	48,566,227	10
Chromosome 25	51,730,745	1	51,730,345	51,730,745	4
Chromosome 26	39,257,614	1	39,256,414	39,257,614	12
Chromosome 27	46,662,488	1	46,661,788	46,662,488	7
Chromosome 28	41,733,330	1	41,732,930	41,733,330	4
Chromosome 29	42,517,134	1	42,516,734	42,517,134	4
Chromosome 30	40,643,782	1	40,643,382	40,643,782	4
Chromosome 31	39,901,454	1	39,900,754	39,901,454	7
Chromosome 32	40,225,481	1	40,224,581	40,225,481	9
Chromosome 33	32,139,216	1	32,138,516	32,139,216	7
Chromosome 34	42,397,973	1	42,397,673	42,397,973	3
Chromosome 35	28,051,305	1	28,050,405	28,051,305	9
Chromosome 36	31,223,415	1	31,223,115	31,223,415	3
Chromosome 37	30,785,915	1	30,785,715	30,785,915	2
Chromosome 38	24,803,098	1	24,802,598	24,803,098	5
Chromosome X	124,992,030	1	124,987,930	124,992,030	41
unplaced	128,440,654	2,158	128,418,854	61,292	218

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UU_Cfam_GSD_1.0

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

Comment

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