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Source database (GenBank or RefSeq) File type

UNSW_CanFamBas_1.0

This assembly has been replaced. See current version

Organism name:

Canis lupus familiaris (dog)

Infraspecific name:

Breed: Basenji

Isolate:

UNSW-BAS-2019

Sex:

female

BioSample:

SAMN14380863

BioProject:

PRJNA612738

Submitter:

University of New South Wales

Date:

2020/06/11

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_013276365.1 (replaced)

RefSeq assembly accession:

GCF_013276365.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

JAAQRD01

Assembly method:

Flye v. 2.6-release; Juicebox v. DEC-2019; PBJelly v. 15.8.24

Expected final version:

yes

Genome coverage:

112.2x

Sequencing technology:

Oxford Nanopore PromethION; BGISEQ-500; Illumina NovaSeq

IDs: 7268391 [UID] 20019798 [GenBank] 20406008 [RefSeq]

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013276365.2	n/a	n/a	UNSW_CanFamBas_1.2	Chromosome	Latest GenBank
GCA_013276365.1	=	GCF_013276365.1	UNSW_CanFamBas_1.0	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	2,345,029,490
Total ungapped length	2,344,953,059
Gaps between scaffolds	0
Number of scaffolds	650
Scaffold N50	64,291,023
Scaffold L50	14
Number of contigs	799
Contig N50	37,759,230
Contig L50	23
Total number of chromosomes and plasmids	39
Number of component sequences (WGS or clone)	650

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023363.1	=	NC_049742.1	0
Chromosome 2	CM023364.1	=	NC_049743.1	12
Chromosome 3	CM023365.1	=	NC_049744.1	0
Chromosome 4	CM023366.1	=	NC_049745.1	0
Chromosome 5	CM023367.1	=	NC_049746.1	0
Chromosome 6	CM023368.1	=	NC_049747.1	2
Chromosome 7	CM023369.1	=	NC_049748.1	2
Chromosome 8	CM023370.1	=	NC_049749.1	6
Chromosome 9	CM023371.1	=	NC_049750.1	6
Chromosome 10	CM023372.1	=	NC_049751.1	0
Chromosome 11	CM023373.1	=	NC_049752.1	8
Chromosome 12	CM023374.1	=	NC_049753.1	0
Chromosome 13	CM023375.1	=	NC_049754.1	3
Chromosome 14	CM023376.1	=	NC_049755.1	2
Chromosome 15	CM023377.1	=	NC_049756.1	0
Chromosome 16	CM023378.1	=	NC_049757.1	13
Chromosome 17	CM023379.1	=	NC_049758.1	1
Chromosome 18	CM023380.1	=	NC_049759.1	4
Chromosome 19	CM023381.1	=	NC_049760.1	2
Chromosome 20	CM023382.1	=	NC_049761.1	0
Chromosome 21	CM023383.1	=	NC_049762.1	0
Chromosome 22	CM023384.1	=	NC_049763.1	1
Chromosome 23	CM023385.1	=	NC_049764.1	0
Chromosome 24	CM023386.1	=	NC_049765.1	0
Chromosome 25	CM023387.1	=	NC_049766.1	0
Chromosome 26	CM023388.1	=	NC_049767.1	3
Chromosome 27	CM023389.1	=	NC_049768.1	1
Chromosome 28	CM023390.1	=	NC_049769.1	1
Chromosome 29	CM023391.1	=	NC_049770.1	0
Chromosome 30	CM023392.1	=	NC_049771.1	0
Chromosome 31	CM023393.1	=	NC_049772.1	0
Chromosome 32	CM023394.1	=	NC_049773.1	0
Chromosome 33	CM023395.1	=	NC_049774.1	0
Chromosome 34	CM023396.1	=	NC_049775.1	1
Chromosome 35	CM023397.1	=	NC_049776.1	0
Chromosome 36	CM023398.1	=	NC_049777.1	0
Chromosome 37	CM023399.1	=	NC_049778.1	3
Chromosome 38	CM023400.1	=	NC_049779.1	0
Chromosome X	CM023401.1	=	NC_049780.1	2
unplaced	n/a	n/a	n/a	538

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,345,029,490	650	2,344,953,059	64,291,023	149	0
Chromosome 1	Assembled molecule	122,495,832	1	122,492,832	122,495,832	6	0
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	84,212,14883,937,118275,030	13112	84,210,14883,935,118275,030	83,937,11883,937,11840,368	440	000
Chromosome 3	Assembled molecule	92,105,948	1	92,104,948	92,105,948	2	0
Chromosome 4	Assembled molecule	88,678,928	1	88,677,928	88,678,928	2	0
Chromosome 5	Assembled molecule	88,932,562	1	88,931,062	88,932,562	3	0
Chromosome 6	AllAssembled moleculeUnlocalized scaffolds	77,634,75877,624,7859,973	312	77,634,25877,624,2859,973	77,624,78577,624,7856,463	110	000
Chromosome 7	AllAssembled moleculeUnlocalized scaffolds	80,776,19980,731,06945,130	312	80,775,19980,730,06945,130	80,731,06980,731,06939,906	220	000
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	74,724,48773,571,8951,152,592	716	74,720,98773,571,8951,149,092	73,571,89573,571,8951,082,720	707	000
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	61,161,92961,088,55973,370	716	61,159,42961,086,05973,370	61,088,55961,088,55920,864	550	000
Chromosome 10	Assembled molecule	70,337,451	1	70,336,951	70,337,451	1	0
Chromosome 11	AllAssembled moleculeUnlocalized scaffolds	74,396,25574,079,022317,233	918	74,394,25574,077,022317,233	74,079,02274,079,022242,683	440	000
Chromosome 12	Assembled molecule	72,601,125	1	72,601,125	72,601,125	0	0
Chromosome 13	AllAssembled moleculeUnlocalized scaffolds	63,225,11063,189,50135,609	413	63,224,61063,189,00135,609	63,189,50163,189,50122,267	110	000
Chromosome 14	AllAssembled moleculeUnlocalized scaffolds	60,739,89360,727,89112,002	312	60,739,89360,727,89112,002	60,727,89160,727,8918,952	000	000
Chromosome 15	Assembled molecule	64,291,023	1	64,290,023	64,291,023	2	0
Chromosome 16	AllAssembled moleculeUnlocalized scaffolds	60,291,76759,917,745374,022	14113	60,286,26759,912,245374,022	59,917,74559,917,74549,313	11110	000
Chromosome 17	AllAssembled moleculeUnlocalized scaffolds	64,434,98864,428,2296,759	211	64,433,48864,426,7296,759	64,428,22964,428,2296,759	330	000
Chromosome 18	AllAssembled moleculeUnlocalized scaffolds	55,572,63055,524,94647,684	514	55,571,13055,523,44647,684	55,524,94655,524,94613,658	330	000
Chromosome 19	AllAssembled moleculeUnlocalized scaffolds	54,097,31554,051,28146,034	312	54,095,81554,049,78146,034	54,051,28154,051,28140,046	330	000
Chromosome 20	Assembled molecule	58,423,659	1	58,423,659	58,423,659	0	0
Chromosome 21	Assembled molecule	51,098,066	1	51,097,066	51,098,066	2	0
Chromosome 22	AllAssembled moleculeUnlocalized scaffolds	61,552,14861,548,9243,224	211	61,550,64861,547,4243,224	61,548,92461,548,9243,224	330	000
Chromosome 23	Assembled molecule	52,864,858	1	52,864,358	52,864,858	1	0
Chromosome 24	Assembled molecule	47,805,869	1	47,805,369	47,805,869	1	0
Chromosome 25	Assembled molecule	51,434,566	1	51,434,066	51,434,566	1	0
Chromosome 26	AllAssembled moleculeUnlocalized scaffolds	39,256,93637,989,6901,267,246	413	39,247,74337,984,4971,263,246	37,989,69037,989,6901,248,629	19118	000
Chromosome 27	AllAssembled moleculeUnlocalized scaffolds	46,343,89646,255,05888,838	211	46,343,89646,255,05888,838	46,255,05846,255,05888,838	000	000
Chromosome 28	AllAssembled moleculeUnlocalized scaffolds	41,336,02641,327,3788,648	211	41,335,02641,326,3788,648	41,327,37841,327,3788,648	220	000
Chromosome 29	Assembled molecule	42,015,559	1	42,015,559	42,015,559	0	0
Chromosome 30	Assembled molecule	40,429,152	1	40,429,152	40,429,152	0	0
Chromosome 31	Assembled molecule	39,358,666	1	39,358,666	39,358,666	0	0
Chromosome 32	Assembled molecule	38,764,302	1	38,763,802	38,764,302	1	0
Chromosome 33	Assembled molecule	31,480,421	1	31,479,921	31,480,421	1	0
Chromosome 34	AllAssembled moleculeUnlocalized scaffolds	42,147,96042,143,5124,448	211	42,147,46042,143,0124,448	42,143,51242,143,5124,448	110	000
Chromosome 35	Assembled molecule	26,557,760	1	26,557,760	26,557,760	0	0
Chromosome 36	Assembled molecule	31,053,474	1	31,053,474	31,053,474	0	0
Chromosome 37	AllAssembled moleculeUnlocalized scaffolds	30,798,74530,789,4299,316	413	30,798,74530,789,4299,316	30,789,42930,789,4295,442	000	000
Chromosome 38	Assembled molecule	24,377,179	1	24,377,179	24,377,179	0	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	125,342,258125,260,70881,550	312	125,328,004125,246,45481,550	125,260,708125,260,70851,938	23230	000
unplaced	Assembled molecule	11,877,642	538	11,861,158	90,581	34	0

Assembly

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UNSW_CanFamBas_1.0

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

Comment

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