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ASM3952992v1

Organism name:
Kitasatospora saccharophila (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:14559
Infraspecific name:
Strain: JCM 14559
BioSample:
SAMD00645226
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2024/02/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_039529925.1 (latest)
RefSeq assembly accession:
GCF_039529925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BAAANS01
Assembly method:
SOAPdenovo v. 2.04; SPAdes v. 3.13.0; Velvet v. 1.2.10; Platanus-b v. 1.2.302
Genome coverage:
71x
Sequencing technology:
MGISEQ-2000

IDs: 22555641 [UID] 58712638 [GenBank] 58823308 [RefSeq]

History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10009759 

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length8,804,199
Total ungapped length8,803,213
Gaps between scaffolds0
Number of scaffolds211
Scaffold N50122,639
Scaffold L5026
Number of contigs223
Contig N50120,733
Contig L5026
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)211

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,804,1992118,803,213122,639120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Kitasatospora saccharophilaKitasatospora saccharophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000716545.1Kitasatospora phosalacineatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.5466.2676.54

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected