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ASM97196v1

Organism name:
Paenibacillus wulumuqiensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: Y24
BioSample:
SAMN03447299
BioProject:
PRJNA279433
Submitter:
Nanjing Tech University
Date:
2015/04/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000971965.1 (latest)
RefSeq assembly accession:
GCF_000971965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LAQP01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
12.0x
Sequencing technology:
Illumina HiSeq

IDs: 322151 [UID] 1727088 [GenBank] 1728278 [RefSeq]

See Genome Information for Paenibacillus wulumuqiensis

History (Show revision history)

Comment

Global statistics

Total sequence length5,240,711
Total ungapped length5,240,402
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50459,295
Scaffold L504
Number of contigs41
Contig N50353,662
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,240,711335,240,402459,29580

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus wulumuqiensisPaenibacillus wulumuqiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001421015.2Paenibacillus bovistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.3162.7159.57

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected