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Source database (GenBank or RefSeq) File type

ASM171916v1

Organism name:: Erythrobacter litoralis (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: DSM:8509
Infraspecific name:: Strain: DSM 8509
BioSample:: SAMN05601187
BioProject:: PRJNA339618
Submitter:: The University of Chicago
Date:: 2016/09/06
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001719165.1 (latest)
RefSeq assembly accession:: GCF_001719165.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3 in PacBio SMRT
Genome coverage:: 143.36
Sequencing technology:: PacBio

IDs: 790581 [UID] 3434228 [GenBank] 3437248 [RefSeq]

See Genome Information for Erythrobacter litoralis

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001719165.1	=	GCF_001719165.1	ASM171916v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 13:06:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,151
CDSs (total)::3,099
Genes (coding)::3,065
CDSs (with protein)::3,065
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::34
CDSs (without protein)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::16 of 34
Pseudo Genes (incomplete)::22 of 34
Pseudo Genes (internal stop)::13 of 34
Pseudo Genes (multiple problems)::13 of 34
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,251,353
Total ungapped length	3,251,353
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.99	98.73	99.88
Best-match type	99.99	98.73	99.88

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ASM171916v1

See Genome Information for Erythrobacter litoralis

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Average Nucleotide Identity (ANI) data

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