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HparainfluenzaeHK2019v1.0

Organism name:
Haemophilus parainfluenzae HK2019 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: HK2019
BioSample:
SAMN00761859
BioProject:
PRJNA75175
Submitter:
J. Craig Venter Institute
Date:
2012/05/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000261285.1 (latest)
RefSeq assembly accession:
GCF_000261285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJTC01
Assembly method:
Newbler v. 2.6
Genome coverage:
27x
Sequencing technology:
Illumina

IDs: 483168 [UID] 377168 [GenBank] 483168 [RefSeq]

See Genome Information for Haemophilus parainfluenzae

Pathogen Detection Resources

There are 271 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length2,101,432
Total ungapped length2,101,432
Number of contigs42
Contig N50135,458
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,101,432422,101,432135,45800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haemophilus parainfluenzae HK2019Haemophilus parainfluenzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000191405.1Haemophilus parainfluenzae ATCC 33392suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000191405.1Haemophilus parainfluenzaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.3490.0589.67
Best-match type95.3490.0589.67

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna