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ntsars86ev1.0

Organism name:
SAR86 cluster bacterium SAR86E (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
SAR86E
BioSample:
SAMN02436393
BioProject:
PRJNA170317
Submitter:
J. Craig Venter Institute
Date:
2012/10/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_000307935.1 (latest)
RefSeq assembly accession:
GCF_000307935.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMWX01
Assembly method:
CLC NGS Cell v. 2011
Single-cell amplification:
MDA
Genome coverage:
100x
Sequencing technology:
Illumina

IDs: 454458 [UID] 449458 [GenBank] 454458 [RefSeq]

See Genome Information for SAR86 cluster bacterium SAR86E

History (Show revision history)

Comment

Source DNA avaiable from Chris Dupont, The J. Craig Venter Institute, 10355 Science Center Dr., San Diego, CA 92121, USA

Global statistics

Total sequence length1,396,800
Total ungapped length1,396,800
Number of contigs13
Contig N50346,914
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,396,800131,396,800346,91400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
SAR86 cluster bacterium SAR86ESAR86 cluster bacterium SAR86E

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900095705.1Fusobacterium massiliensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.100.070.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena