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Avibacterium paragallinarum 221

Organism name:
Avibacterium paragallinarum 221 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 221
BioSample:
SAMN02471146
BioProject:
PRJNA185330
Submitter:
The Institute of Animal Husbandry and Veterinary Medicine of Beijing Academy of Agriculture and Forestry Sciences
Date:
2013/03/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000348525.1 (latest)
RefSeq assembly accession:
GCF_000348525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOGF01
Assembly method:
SOAPdenovo v. v1.05 src
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 628718 [UID] 560428 [GenBank] 628718 [RefSeq]

See Genome Information for Avibacterium paragallinarum

There are 95 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, 9 Shuguang Huayuan Middle Street, Haidian District, Beijing, China

Global statistics

Total sequence length2,668,385
Total ungapped length2,668,385
Number of contigs135
Contig N5071,093
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)135

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,668,3851352,668,38571,09300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Avibacterium paragallinarum 221Avibacterium paragallinarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900450705.1Avibacterium paragallinarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900450705.1Avibacterium paragallinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8097.7891.22
Best-match type99.8097.7891.22

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna