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ASM48493v1

Organism name:
Euryarchaeota archaeum SCGC AAA287-E17 (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SCGC AAA287-E17
BioSample:
SAMN02441105
BioProject:
PRJNA190806
Submitter:
DOE Joint Genome Institute
Date:
2013/10/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_000484935.1 (latest)
RefSeq assembly accession:
GCF_000484935.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AXWJ01
Assembly method:
Unknown program v. before 2013-03-07
Single-cell amplification:
Yes
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 72911 [UID] 832668 [GenBank] 1862988 [RefSeq]

See Genome Information for Euryarchaeota archaeum SCGC AAA287-E17

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1014083
Source DNA and Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Source DNA available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Organism available from Ramunas Stepanauskas (rstepanauskas@bigelow.org)
Contacts: Ramunas Stepanauskas (rstepanauskas@bigelow.org)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Euryarchaeota archaeon SCGC AAA287-E17
sequencing_meth::WGS
GOLD Stamp ID::Gi22688
##MIGS-Data-END##

Global statistics

Total sequence length928,936
Total ungapped length928,936
Number of contigs52
Contig N5042,660
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced928,93652928,93642,66000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Euryarchaeota archaeum SCGC AAA287-E17Euryarchaeota archaeum SCGC AAA287-E17

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022117465.1Candidatus Nitrosopumilus limneticussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type74.571.240.97

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena