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ASM179987v1

Organism name:
Elusimicrobia bacterium GWC2_65_9 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04313861
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001799875.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MGUH01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 832851 [UID] 3556358 [GenBank]

See Genome Information for Elusimicrobia bacterium GWC2_65_9

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 10:21:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,518
CDS (total)::2,475
Genes (coding)::2,032
CDS (coding)::2,032
Genes (RNA)::43
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::40
ncRNAs::1
Pseudo Genes (total)::443
Pseudo Genes (ambiguous residues)::226 of 443
Pseudo Genes (frameshifted)::32 of 443
Pseudo Genes (incomplete)::235 of 443
Pseudo Genes (internal stop)::4 of 443
Pseudo Genes (multiple problems)::54 of 443
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,612,937
Total ungapped length2,595,974
Gaps between scaffolds0
Number of scaffolds139
Scaffold N5026,775
Scaffold L5033
Number of contigs520
Contig N509,652
Contig L5087
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,612,9371392,595,97426,7753810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Elusimicrobia bacterium GWC2_65_9Elusimicrobia bacterium GWC2_65_9

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900182545.1Geodermatophilus aquaeductustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.140.010.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena