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ASM180031v1

Organism name:
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04314372
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001800315.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MGVE01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 833071 [UID] 3556798 [GenBank]

See Genome Information for Elusimicrobia bacterium RIFOXYA2_FULL_47_53

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 12:03:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,013
CDS (total)::1,964
Genes (coding)::1,949
CDS (coding)::1,949
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::44
ncRNAs::2
Pseudo Genes (total)::15
Pseudo Genes (ambiguous residues)::2 of 15
Pseudo Genes (frameshifted)::4 of 15
Pseudo Genes (incomplete)::10 of 15
Pseudo Genes (internal stop)::2 of 15
Pseudo Genes (multiple problems)::3 of 15
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,413,529
Total ungapped length2,413,474
Gaps between scaffolds0
Number of scaffolds20
Scaffold N50192,635
Scaffold L505
Number of contigs23
Contig N50192,635
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,413,529202,413,474192,63530

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Elusimicrobia bacterium RIFOXYA2_FULL_47_53Elusimicrobia bacterium RIFOXYA2_FULL_47_53

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001027545.1Endomicrobium proavitumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.270.040.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena