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ASM182921v1

Organism name:
Spirochaetes bacterium GWB1_66_5 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04314185
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_001829215.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MIAS01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 847511 [UID] 3585968 [GenBank]

See Genome Information for Spirochaetes bacterium GWB1_66_5

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 23:26:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,924
CDS (total)::2,896
Genes (coding)::1,884
CDS (coding)::1,884
Genes (RNA)::28
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::25
ncRNAs::3
Pseudo Genes (total)::1,012
Pseudo Genes (ambiguous residues)::525 of 1,012
Pseudo Genes (frameshifted)::70 of 1,012
Pseudo Genes (incomplete)::557 of 1,012
Pseudo Genes (internal stop)::2 of 1,012
Pseudo Genes (multiple problems)::142 of 1,012
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,712,060
Total ungapped length2,646,763
Gaps between scaffolds0
Number of scaffolds295
Scaffold N509,922
Scaffold L5095
Number of contigs1,375
Contig N503,515
Contig L50246
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)295

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,712,0602952,646,7639,9221,0800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Spirochaetes bacterium GWB1_66_5Spirochaetes bacterium GWB1_66_5

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000215705.1Ramlibacter tataouinensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.030.010.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena