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ASM178504v1

Organism name:
Candidatus Muproteobacteria bacterium RBG_16_62_13 (proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04314261
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_001785045.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MFSQ01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 825421 [UID] 3541098 [GenBank]

See Genome Information for Candidatus Muproteobacteria bacterium RBG_16_62_13

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/07/2016 18:27:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,151
CDS (total)::2,117
Genes (coding)::1,541
CDS (coding)::1,541
Genes (RNA)::34
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::28
ncRNAs::5
Pseudo Genes (total)::576
Pseudo Genes (ambiguous residues)::337 of 576
Pseudo Genes (frameshifted)::77 of 576
Pseudo Genes (incomplete)::264 of 576
Pseudo Genes (internal stop)::5 of 576
Pseudo Genes (multiple problems)::106 of 576
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,049,531
Total ungapped length2,004,564
Gaps between scaffolds0
Number of scaffolds152
Scaffold N5016,676
Scaffold L5040
Number of contigs850
Contig N504,778
Contig L50136
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)152

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,049,5311522,004,56416,6766980

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Muproteobacteria bacterium RBG_16_62_13Candidatus Muproteobacteria bacterium RBG_16_62_13

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002355735.1Sulfuricaulis limicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.9710.027.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena