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ASM242016v1

Organism name:
Nitrospirae bacterium UBA5696 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA5696
BioSample:
SAMN06457674
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002420165.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DIHM01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
20.75x
Sequencing technology:
Illumina

IDs: 1259151 [UID] 5162828 [GenBank]

See Genome Information for Nitrospirae bacterium UBA5696

History (Show revision history)

Comment

Global statistics

Total sequence length1,618,026
Total ungapped length1,607,593
Gaps between scaffolds0
Number of scaffolds103
Scaffold N5026,042
Scaffold L5019
Number of contigs342
Contig N509,500
Contig L5045
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)103

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,618,0261031,607,59326,0422390

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospirae bacterium UBA5696Nitrospirae bacterium UBA5696

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000755505.1Leptospirillum ferriphilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.730.230.15

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena