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ASM232318v1

Organism name:
Proteobacteria bacterium UBA1541 (proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA1541
BioSample:
SAMN06455904
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002323185.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DCPP01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
284.57x
Sequencing technology:
Illumina

IDs: 1210001 [UID] 5044918 [GenBank]

See Genome Information for Proteobacteria bacterium UBA1541

History (Show revision history)

Comment

Global statistics

Total sequence length2,531,071
Total ungapped length2,523,376
Gaps between scaffolds0
Number of scaffolds118
Scaffold N5032,514
Scaffold L5025
Number of contigs189
Contig N5026,724
Contig L5033
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)118

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,531,0711182,523,37632,514710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteobacteria bacterium UBA1541Proteobacteria bacterium UBA1541

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017163705.1Xanthomonas bonasiaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.050.150.07

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena