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ASM229991v1

Organism name:
Proteobacteria bacterium UBA652 (proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA652
BioSample:
SAMN06455006
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002299915.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DBOG01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
30.46x
Sequencing technology:
Illumina

IDs: 1196421 [UID] 5006918 [GenBank]

See Genome Information for Proteobacteria bacterium UBA652

History (Show revision history)

Comment

Global statistics

Total sequence length1,890,107
Total ungapped length1,875,357
Gaps between scaffolds0
Number of scaffolds82
Scaffold N5028,905
Scaffold L5019
Number of contigs124
Contig N5022,144
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,890,107821,875,35728,905420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteobacteria bacterium UBA652Proteobacteria bacterium UBA652

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020447225.1Methylophaga pinxianiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.550.150.09

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena