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ASM239662v1

Organism name:
Gammaproteobacteria bacterium UBA5012 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA5012
BioSample:
SAMN06455742
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002396625.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DGYG01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
20.9x
Sequencing technology:
Illumina

IDs: 1246821 [UID] 5133838 [GenBank]

See Genome Information for Gammaproteobacteria bacterium UBA5012

History (Show revision history)

Comment

Global statistics

Total sequence length4,004,074
Total ungapped length3,964,897
Gaps between scaffolds0
Number of scaffolds203
Scaffold N5029,568
Scaffold L5038
Number of contigs388
Contig N5019,809
Contig L5059
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)203

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,004,0742033,964,89729,5681850

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gammaproteobacteria bacterium UBA5012Gammaproteobacteria bacterium UBA5012

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001028665.1Burkholderia pyrrociniasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type77.700.050.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena