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Source database (GenBank or RefSeq) File type

ASM227928v1

Organism name:

Acidobacteria bacterium 37-71-11 (bacteria)

Taxonomy check:

Inconclusive

Isolate:

37-71-11

BioSample:

SAMN06622419

BioProject:

PRJNA379596

Submitter:

None

Date:

2017/08/16

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002279285.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

NCBR01

Assembly method:

idba_ud v. 1

Expected final version:

yes

Genome coverage:

11x

Sequencing technology:

Illumina HiSeq

IDs: 1186031 [UID] 4980178 [GenBank]

See Genome Information for Acidobacteria bacterium 37-71-11

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002279285.1	n/a	n/a	ASM227928v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/07/2017 16:24:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,853
CDS (total)::2,813
Genes (coding)::2,724
CDS (coding)::2,724
Genes (RNA)::40
rRNAs::1, 1 (5S, 16S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs:: 
tRNAs::34
ncRNAs::4
Pseudo Genes (total)::89
Pseudo Genes (ambiguous residues)::3 of 89
Pseudo Genes (frameshifted)::37 of 89
Pseudo Genes (incomplete)::47 of 89
Pseudo Genes (internal stop)::4 of 89
Pseudo Genes (multiple problems)::2 of 89
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,016,655
Total ungapped length	3,016,582
Gaps between scaffolds	0
Number of scaffolds	407
Scaffold N50	11,479
Scaffold L50	87
Number of contigs	410
Contig N50	11,317
Contig L50	88
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	407

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.05	0.05	0.05

Assembly

Genome Assembly

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ASM227928v1

See Genome Information for Acidobacteria bacterium 37-71-11

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Taxonomy Check Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result