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ASM217299v1

Organism name:
Oceanospirillales bacterium TMED91 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
TMED91
BioSample:
SAMN06971945
BioProject:
PRJNA385857
Submitter:
Tara Oceans Consortium
Date:
2017/06/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002172995.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NHES01
Assembly method:
Megahit v. 1.0.3; Minimus2 v. 3.1.0
Expected final version:
yes
Genome coverage:
Not Applicable
Sequencing technology:
Illumina HiSeq

IDs: 1120931 [UID] 4557048 [GenBank]

See Genome Information for Oceanospirillales bacterium TMED91

History (Show revision history)

Comment

This genome was assembled from the publically available reads for the TARA Oceans Project deposited in the Sequence Read Archive (SRA) database with accessions ERS488346, ERS488330, ERS477998, ERS477979, ERS488509, ERS488486, ERS478040, ERS477953, ERS477931, ERS488147, ERS488119, and ERS478017.
Annotation was added ... by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/19/2017 09:36:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,216
CDS (total)::1,199
Genes (coding)::1,185
CDS (coding)::1,185
Genes (RNA)::17
tRNAs::11
ncRNAs::6
Pseudo Genes (total)::14
Pseudo Genes (ambiguous residues)::7 of 14
Pseudo Genes (frameshifted)::1 of 14
Pseudo Genes (incomplete)::5 of 14
Pseudo Genes (internal stop)::2 of 14
Pseudo Genes (multiple problems)::1 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,145,433
Total ungapped length1,145,433
Number of contigs55
Contig N5023,643
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)55

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,145,433551,145,43323,64300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceanospirillales bacterium TMED91Oceanospirillales bacterium TMED91

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003864255.1Aestuariirhabdus litoreatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.760.010.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena