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ASM522318v1

Organism name:
candidate division LCP-89 bacterium B3_LCP (bacteria)
Taxonomy check:
Inconclusive
Isolate:
B3_LCP
BioSample:
SAMN07236653
BioProject:
PRJNA383916
Submitter:
Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
Date:
2019/05/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_005223185.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NJBN01
Assembly method:
Spades v. 3.6
Expected final version:
no
Genome coverage:
18x
Sequencing technology:
llumina MiSeq

IDs: 2791071 [UID] 9826448 [GenBank]

See Genome Information for candidate division LCP-89 bacterium B3_LCP

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/20/2017 12:17:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,025
CDS (total)::2,972
Genes (coding)::2,956
CDS (coding)::2,956
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::5 of 16
Pseudo Genes (incomplete)::10 of 16
Pseudo Genes (internal stop)::1 of 16
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,794,239
Total ungapped length3,794,239
Number of contigs18
Contig N50359,442
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,794,239183,794,239359,44200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
candidate division LCP-89 bacterium B3_LCPcandidate division LCP-89 bacterium B3_LCP

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000165465.1Halanaerobium praevalenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.170.070.11

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena