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ASM278070v1

Organism name:
Elusimicrobia bacterium CG03_land_8_20_14_0_80_50_18 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG03_land_8_20_14_0_80_50_18
BioSample:
SAMN06659190
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002780705.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PEUP01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1443921 [UID] 5661428 [GenBank]

See Genome Information for Elusimicrobia bacterium CG03_land_8_20_14_0_80_50_18

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/07/2017 13:51:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,375
CDS (total)::1,343
Genes (coding)::1,310
CDS (coding)::1,310
Genes (RNA)::32
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::27
ncRNAs::2
Pseudo Genes (total)::33
Pseudo Genes (ambiguous residues)::21 of 33
Pseudo Genes (frameshifted)::5 of 33
Pseudo Genes (incomplete)::7 of 33
Pseudo Genes (internal stop)::1 of 33
Pseudo Genes (multiple problems)::1 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,312,139
Total ungapped length1,308,125
Gaps between scaffolds0
Number of scaffolds97
Scaffold N5017,377
Scaffold L5026
Number of contigs160
Contig N5012,359
Contig L5035
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)97

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,312,139971,308,12517,377630

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Elusimicrobia bacterium CG03_land_8_20_14_0_80_50_18Elusimicrobia bacterium CG03_land_8_20_14_0_80_50_18

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003173615.1Falsiroseomonas bellatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.020.080.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena