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ASM284977v1

Organism name:
Glaesserella sp. 15-184 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 15-184
BioSample:
SAMN07488426
BioProject:
PRJNA397816
Submitter:
The University of Melbourne
Date:
2018/01/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002849775.1 (latest)
RefSeq assembly accession:
GCF_002849775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq; Oxford nanopore

IDs: 1503901 [UID] 5827308 [GenBank] 7505198 [RefSeq]

See Genome Information for Glaesserella sp. 15-184

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Marc Marenda, FVAS 250 Princess HWY Werribee 3030 Victoria, Australia.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/03/2023 04:43:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,308
CDSs (total)::2,226
Genes (coding)::2,207
CDSs (with protein)::2,207
Genes (RNA)::82
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::19
CDSs (without protein)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::6 of 19
Pseudo Genes (incomplete)::14 of 19
Pseudo Genes (internal stop)::1 of 19
Pseudo Genes (multiple problems)::2 of 19
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,399,550
Total ungapped length2,399,550
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002849785.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023057.1=NZ_CP023057.1
Plasmid unnamed1CP023058.1=NZ_CP023058.1
Plasmid unnamed2CP023059.1=NZ_CP023059.1
Plasmid unnamed3CP023060.1=NZ_CP023060.1

Assembly statistics

MoleculeTotal
Length
All2,399,550
Chromosome 2,384,333
Plasmid unnamed110,207
Plasmid unnamed22,645
Plasmid unnamed32,365

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Glaesserella sp. 15-184Glaesserella sp. 15-184

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003260095.1Glaesserella australistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9995.88100.00

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna