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ASM327924v1

Organism name:
marine archaeum AG-341-O08 (archaea)
Taxonomy check:
Inconclusive
Isolate:
AG-341-O08
BioSample:
SAMN08886102
Submitter:
Massachusetts Institute of Technology
Date:
2018/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_003279245.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QCAO01
Assembly method:
SPAdes v. 3.0.0
Expected final version:
yes
Single-cell amplification:
MDA
Genome coverage:
8512x
Sequencing technology:
Illumina NextSeq 500

IDs: 1777091 [UID] 6734998 [GenBank]

See Genome Information for marine archaeum AG-341-O08

History (Show revision history)

Comment

Global statistics

Total sequence length156,656
Total ungapped length156,656
Number of contigs5
Contig N5079,720
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced156,6565156,65679,72000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
marine archaeum AG-341-O08marine archaeum AG-341-O08

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana