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ASM2472351v1

Organism name:
Campylobacter sp. W0066.2 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: W0066.2
BioSample:
SAMN14886938
BioProject:
PRJNA865355
Submitter:
USDA, ARS, WRRC
Date:
2022/08/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_024723515.1 (latest)
RefSeq assembly accession:
GCF_024723515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JANQCV01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
57x
Sequencing technology:
Illumina MiSeq

IDs: 13525571 [UID] 35285138 [GenBank] 55039768 [RefSeq]

See Genome Information for Campylobacter sp. W0066.2

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2022 15:53:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,593
CDSs (total)::1,548
Genes (coding)::1,496
CDSs (with protein)::1,496
Genes (RNA)::45
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::52
CDSs (without protein)::52
Pseudo Genes (ambiguous residues)::0 of 52
Pseudo Genes (frameshifted)::37 of 52
Pseudo Genes (incomplete)::14 of 52
Pseudo Genes (internal stop)::13 of 52
Pseudo Genes (multiple problems)::12 of 52
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,498,514
Total ungapped length1,498,514
Number of contigs56
Contig N50116,229
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)56

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,498,514561,498,514116,22900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter sp. W0066.2Campylobacter sp. W0066.2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008245025.1Campylobacter laritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.9688.7989.39

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna