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BPUTEOSOX

Organism name:
thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev) (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
BPUTEOSOX
BioSample:
SAMEA4553731
BioProject:
PRJEB17996
Submitter:
MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
Date:
2019/05/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900127505.1 (latest)
RefSeq assembly accession:
GCF_900127505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UEXF01
Genome coverage:
3600x

IDs: 3424071 [UID] 11172218 [GenBank] 11388388 [RefSeq]

See Genome Information for thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev)

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,189,522
Total ungapped length2,005,874
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50123,055
Scaffold L507
Number of contigs190
Contig N5028,642
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,189,522812,005,874123,0551090

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev)thiotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev)

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281385.1Candidatus Pseudothioglobus singularissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.220.400.47

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena