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NIH_TR_1.0

Organism name:
Grammomys surdaster (rodents)
Isolate:
TR1022
Sex:
female
BioSample:
SAMN11172698
BioProject:
PRJNA526040
Submitter:
NIH Sequencing Center
Date:
2019/04/12
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004785775.1 (latest)
RefSeq assembly accession:
GCF_004785775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SRMG01
Assembly method:
Supernova v. 2.1.1
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina NovaSeq

IDs: 2561071 [UID] 9282688 [GenBank] 9338188 [RefSeq]

See Genome Information for Grammomys surdaster

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,412,664,998
Total ungapped length2,378,001,958
Gaps between scaffolds0
Number of scaffolds23,656
Scaffold N508,094,907
Scaffold L5085
Number of contigs100,279
Contig N5051,731
Contig L5013,729
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23,656

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,412,664,99823,6562,378,001,9588,094,90776,6230