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33763_C01

Organism name:
Avibacterium volantium (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC3438
BioSample:
SAMEA2822162
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/12/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900635775.1 (latest)
RefSeq assembly accession:
GCF_900635775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 2178851 [UID] 8120028 [GenBank] 8152358 [RefSeq]

See Genome Information for Avibacterium volantium

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_900635775.1-RS_2024_04_05
Annotation Date::04/05/2024 03:27:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,137
CDSs (total)::2,058
Genes (coding)::2,008
CDSs (with protein)::2,008
Genes (RNA)::79
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::50
CDSs (without protein)::50
Pseudo Genes (ambiguous residues)::0 of 50
Pseudo Genes (frameshifted)::31 of 50
Pseudo Genes (incomplete)::22 of 50
Pseudo Genes (internal stop)::10 of 50
Pseudo Genes (multiple problems)::11 of 50
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,230,476
Total ungapped length2,230,476
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900635774.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR134167.1=NZ_LR134167.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,230,476

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Avibacterium volantiumAvibacterium volantium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900454485.1Avibacterium gallinarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.5787.9679.95

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected