Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM18873v1

Organism name:: Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ST4/74
BioSample:: SAMN02602988
BioProject:: PRJNA56087
Submitter:: Ark Genomics
Date:: 2011/02/10
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000188735.1 (latest)
RefSeq assembly accession:: GCF_000188735.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 378298 [UID] 244088 [GenBank] 378298 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 527842 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000188735.1	=	GCF_000188735.1	ASM18873v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA available from Prof. Mark Stevens (Mark-P.Stevens@bbsrc.ac.uk) at the Institute for Animal Health

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 05:22:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,976
CDSs (total)::4,853
Genes (coding)::4,729
CDSs (with protein)::4,729
Genes (RNA)::123
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::15
Pseudo Genes (total)::124
CDSs (without protein)::124
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::51 of 124
Pseudo Genes (incomplete)::79 of 124
Pseudo Genes (internal stop)::28 of 124
Pseudo Genes (multiple problems)::31 of 124
Pseudo Genes (short protein)::1 of 124
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,067,451
Total ungapped length	5,067,451
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP002487.1	=	NC_016857.1
Plasmid TY474p1	CP002488.1	=	NC_016858.1
Plasmid TY474p2	CP002489.1	=	NC_017675.1
Plasmid TY474p3	CP002490.1	=	NC_016859.1

Molecule	Total Length
All	5,067,451
Chromosome	4,878,013
Plasmid TY474p1	93,842
Plasmid TY474p2	86,908
Plasmid TY474p3	8,688

	ANI	Query coverage	Subject coverage
Declared type	99.92	96.58	98.84
Best-match type	99.92	96.58	98.84

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM18873v1

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 527842 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result