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ASM81753v1

Organism name:
Actinobacillus pleuropneumoniae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 597
BioSample:
SAMN03162179
BioProject:
PRJNA266371
Submitter:
LNCC
Date:
2015/01/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_000817535.1 (latest)
RefSeq assembly accession:
GCF_000817535.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JSVX01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
89.0x
Sequencing technology:
454

IDs: 242441 [UID] 1476038 [GenBank] 1478098 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

There are 88 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,219,395
Total ungapped length2,219,395
Number of contigs59
Contig N5083,702
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)59

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,219,395592,219,39583,70200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus pleuropneumoniaeActinobacillus pleuropneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000167095.1Actinobacillus pleuropneumoniae serovar 1 str. 4074type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000167095.1Actinobacillus pleuropneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1193.4990.52
Best-match type98.1193.4990.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna