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Sample

Organism name:
microbial mat metagenome (metagenomes)
BioSample:
SAMEA2755656
BioProject:
PRJEB7226
Submitter:
UNIVERSITY OF PITTSBURGH
Date:
2015/02/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
partial
Excluded from RefSeq:
  • fragmented assembly
  • genus undefined
  • metagenome
  • partial
GenBank assembly accession:
GCA_000937115.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CEGC01
Genome coverage:
5x

IDs: 302731 [UID] 1652348 [GenBank]

There are 21 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length29,916,034
Total ungapped length29,912,505
Gaps between scaffolds0
Number of scaffolds23,682
Scaffold N501,347
Scaffold L505,042
Number of contigs23,747
Contig N501,346
Contig L505,060
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23,682

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced29,916,03423,68229,912,5051,347650