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ASM176697v1

Organism name:
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04315318
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001766975.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MEKN01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 816411 [UID] 3523008 [GenBank]

See Genome Information for Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/06/2016 13:30:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,621
CDS (total)::1,599
Genes (coding)::1,193
CDS (coding)::1,193
Genes (RNA)::22
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::19
ncRNAs::3
Pseudo Genes (total)::406
Pseudo Genes (ambiguous residues)::55 of 406
Pseudo Genes (frameshifted)::16 of 406
Pseudo Genes (incomplete)::356 of 406
Pseudo Genes (internal stop)::3 of 406
Pseudo Genes (multiple problems)::24 of 406
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,496,642
Total ungapped length1,492,837
Gaps between scaffolds0
Number of scaffolds383
Scaffold N505,815
Scaffold L5083
Number of contigs480
Contig N505,091
Contig L5091
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)383

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,496,6423831,492,8375,815970

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000953855.3Mizugakiibacter sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.600.050.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena